Scaffold Ga0211558_10099244

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10099244
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1425
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006772	Metagenome	365	Y
F045677	Metagenome	152	N
F048238	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_100992441	F045677	N/A	MKEIKTYLPEELIDRLSIEAKEKGIHRSELIRERLMQPPNHLGLTTSDFHKAVTKVRRRSSYGLDRQQAESLVATVFNELCNSQDGD
Ga0211558_100992442	F048238	N/A	MGTRSVNLQYCQISDEHCPLAITRFTSFDLDNKPLSVEQVTYESNMEYMERQVINALSCNVEVSILTATPIHEFKRLHYLFNKD
Ga0211558_100992443	F006772	N/A	MPQPKSGRQIIMERLNKAIQLSTTGDLQRAAMFLEGARKVRQGSRRQRTTARSAQATAWKKKVDNSITW