Scaffold Ga0211558_10019040

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10019040
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3522
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018081	Metagenome	237	Y
F044193	Metagenome	155	Y
F090880	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_1001904010	F044193	AGGAG	MIIEEYKKEYKDYFMFITVHHSMIEVSVYSYTNDHFEYEQKFIDYSVKEVYELICERIDNNELKEVA
Ga0211558_100190403	F090880	AGGAG	MSNPTQKDRQEIAEALNEHYGRTINGDFTANHICNAVILKSYCPDSPGWSGDIALVVHGGGSCFKDILYRIDNKWTWAESMNEGDYNCNKELI
Ga0211558_100190407	F018081	AGGAG	MKHFKDREFSLHNYMCDILYEFYEKNELEHLCALDSLAVGNYKNTKHYLFLQRFCSVWDRVEQRGEIT