Scaffold Ga0211558_10013474

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10013474
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4224
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062681	Metagenome	130	N
F087047	Metagenome	110	N
F093732	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_100134742	F087047	AGG	MTKFKERYIFCFESDQHDETILWRYTDEAEHAANNHRTYKPKVYDLIILNQDLPKQLKFDIRHELLSDILQGDSKLPQKRP
Ga0211558_100134743	F062681	GGAG	MTEFKDAVEKQRGLQAYEEWAQQIRYIHSDGWEGTRTIVYNDGTEKLFNLKTDQLIFEQPRKQRRRDLINSNAFVKFLNQIGFYND
Ga0211558_100134745	F093732	GGAG	MSKQGETIHKQLEEILQDMPVQERLERTLARIEQYLAHADEVENLNHVNFINEIKYQLEDITNKEKS