Scaffold Ga0211558_10003977

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10003977
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7854
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006772	Metagenome	365	Y
F011846	Metagenome / Metatranscriptome	286	Y
F045677	Metagenome	152	N
F048238	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_1000397710	F048238	N/A	MGTRSVNLQYCQINDEHCPLAITRFTSFDLDNKPLSVEQVTYESNMDYMERQVINALSCNVEVCILTATPIHEFKRLHYLFNKNQ
Ga0211558_1000397711	F045677	N/A	MKKVETLLPEELIERLSFEAREKGIHRSELIRERLSQPPNHFGLTTSDFHKAVTKVRRRSSYGLDRQQAESLVATVFNALFSPEHGD
Ga0211558_1000397713	F011846	AGGA	MKLSATFLDAIEKENEGGSSKENYLRYTKLTQGKPANFALLEQDPLCYWLVWGETSDGNSMKPFRFLEKPSDEDIKLELGNEYTQMLNFDKTALRKPVECLTWPVYNWDLNSVQVLEVAHISLSRQFAKYGLNKKYSKNLLDWDFELSKIQADMTRYELLIVPRDEDEHDEGQMAKDWKAAERAGFDLSRIVGGGDPFSEG
Ga0211558_100039779	F006772	GGAG	MPLPKSGRQLIMERLNKAIQLATTADLQRAAMFLEGAREVRQGSRRQRTTARSAQATAWKKKVDNSITW