Scaffold Ga0211558_10000444

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10000444
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22307
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (89.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022999	Metagenome	212	N
F048640	Metagenome	148	N
F053978	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_1000044415	F022999	AGGA	MWILVWMQLVTSQGVEYYQLGTFTKEADCQEALSKAVVLVNTSAEMLACLEVDTRQ
Ga0211558_100004447	F053978	AGGAG	MVINETNKQMIRDIIVELFKEVASKQTFGVSDDVLQLDEHLHDWVGAKIDKYKINVYGATLEEKY
Ga0211558_100004448	F048640	AGGAG	MQPKGLHAHARIKYTPTYIQNQLECRLFGKTFRSVAEAARYYGLAPSTAYEYHHQRLHRETFPNRKRWNKWK