Scaffold Ga0211558_10000260

Overview

Basic Information

• Taxon OID: 3300020439
• Scaffold ID: Ga0211558_10000260
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28133
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (85.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_141
• Coordinates
  • Lat. (^o): 9.846
  • Long. (^o): 80.0607
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028314	Metagenome	192	N
F041493	Metagenome / Metatranscriptome	160	Y
F042628	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211558_1000026015	F042628	AGGA	MGKYTKANKNNIFKEEPEISVSEHVVEKNGRRLKMVIPEGKIGYGDKESHAQIAGDLATKHSDDTKAGEKAYEAVRKQRETTSGSTVEEHRKQMAMQKMAGRMPVLNTFQITDPATGEIIATDILFMKTEKSGFVRPLRIRVDAQTGKATEVPV
Ga0211558_1000026019	F041493	AGGAG	MATQQQDYYSKIIDNNDEHLYTTIYDSISGDPFRVKLEMVDHYLKKVRRQSKLQGKNIVFTGEWIPSFVKTEKEIIGSPSSSMAEGVAPQSQVKAGKRRRGRRGRKK
Ga0211558_100002607	F028314	AGGAGG	MKLFTSLLPLMPQPYKNIVKFFLATLKNVDEKKELERIGKLFADILEDGKVTPQEWLTLAGKNGLGILKGNGK