Scaffold Ga0211576_10013806

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10013806
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5039
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F014071	Metagenome / Metatranscriptome	266	Y
F047373	Metagenome	150	Y
F067209	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1001380610	F047373	GGAGG	MIKDQKIDVGDVSYSPLSHVLRFSVAANSDAIRTMEDIMGRKNMSMEEIAEEMGKVLEQAIRMGYTRGGMRRRFD
Ga0211576_1001380612	F005620	GGAG	VTEEETFNKQIETFKTFCRNNRLRLKEDGDGLPIARAIGKFKTDQFFCNFNDGTIGVYVTRETQRQFTYLNKKLVKMGCIPTQLGDFEASYDLEWMNIPPVAKLLKIKKGAPKVRDPKWLRE
Ga0211576_1001380613	F067209	GGAG	MEPLDEESELSMTEWVTKFGDSRDKNQTAELAAKFMFAMSYYHDRMRLHIMLHPLFFVAGFLTAMYLL
Ga0211576_1001380614	F014071	AGGAG	MATRPGRLLDKTFTSFTEASGRLEDTIGWITAAEELAHEVQPGCKAEVTLHLLGKVLEKARTELDQAS