Scaffold Ga0211576_10004185

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10004185
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9923
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (91.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012114	Metagenome	283	Y
F019646	Metagenome	228	Y
F040582	Metagenome	161	Y
F053980	Metagenome	140	Y
F076077	Metagenome	118	N
F103053	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1000418511	F103053	GAGG	MNAYIETSLYDVLDRFDTPKLQMYLLCCQEEKENDGVRVAANILRVRFINEN
Ga0211576_1000418513	F019646	AGGA	MSNNFEIYYASDCCGANVHSDADLCPTCFEHCEVIEERVDYDCSEAVHAAQGLDYFCG
Ga0211576_100041852	F053980	AGGAGG	MNGYELLEQLKKDVKECFTVPNDWLPEEFRDNRSDSVSLADVERKCDARDRCTLSSFEEEAIERAKRVQAYRSQNDRGLEITYLPR
Ga0211576_100041856	F012114	AGGAGG	MSDNNCVVYPRKNVWVVIDLQGNKIGEVGAMTEIEARQKVADHVIIPFTLSHIEE
Ga0211576_100041857	F076077	AGGAG	MFSEQEKLEITIDGLRNGDIFMQDGIPVDEYGDPIFEEDQE
Ga0211576_100041859	F040582	GGAGG	MGLIDLNIQSIVIGYVVGVALMWSICETLYGDNNETRAEKDSENIRPRYDRRYHMLYGDPPE