Scaffold Ga0211576_10001994

Overview

Basic Information

• Taxon OID: 3300020438
• Scaffold ID: Ga0211576_10001994
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15062
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4118
  • Long. (^o): -127.7122
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030245	Metagenome	186	Y
F084850	Metagenome	112	Y
F106100	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211576_1000199410	F084850	N/A	VKISWAKIKLWCFHNWRFLVIGGAIVLAYLLGGKKVKSLQTQLQMSRELYKKETDAINGASNKKAEMMSVANLKYQRALEIAHKTAMESSDHAELIKAERIRRLVEDNKENPEEIDRILNEEFGILVMDPKDKP
Ga0211576_1000199411	F030245	AGGA	MLLFLLSTALAEPLMVHLDAGESAPFDGRLMNDEAVANIIAGREMSMEQCEIQKELAISLTKADLQLEIDYLNAELETETEKNTTLLELRDQEISSLRKEIKPNKTMWAFFGGFLLASGTSLGTYYAVRKIDATN
Ga0211576_100019944	F106100	N/A	MTWPIQLSSHYHTFKLDSHYLTRYIIYYHELGGHMDMITVLIPGGFKPPHVGHYKFFMHYINNPEVSEVRIFCGERQRKVGDDFTVSIEHTEAILRLYGILDNPKVTYQRASVRKGQNGHYTNPFADVYDWAEENHDKTENQISLGLSSKDTGYQAGFLSYFKSFANITEIQHTYEQEHLISATDFRNALAAGKSIKKFIPDHVEEKEVIKVFS