Scaffold Ga0211539_10031248

Overview

Basic Information

• Taxon OID: 3300020437
• Scaffold ID: Ga0211539_10031248
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2087
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_041
• Coordinates
  • Lat. (^o): 14.5
  • Long. (^o): 70.0
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015078	Metagenome	257	Y
F049688	Metagenome / Metatranscriptome	146	Y
F063770	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211539_100312481	F015078	AGGAG	MTKTTEQKFTCKINYEFDITLENLRDLFCTMGQGSDYWATDVIVGNILFEEDEEGVTYVKSGQDYGWEGCCMWLNELTLDSPITVEDIEEDKHQFKVKDVLTAIENIISGKTNLNRHDCGEIFQAFATNDFGLIDSSIADSILQITTYNTLVYG
Ga0211539_100312482	F049688	N/A	MSKTQTSLKTILLDAINDELATNTYDHPILDNSDTKNWSDMDKFQWAFDKYMIEVGGFETLEYWFSGLALGIPFTHYQIEQLGYNSDTFFADLGKELCRITGYSDNPKAYTRKIRS
Ga0211539_100312483	F063770	AGGTGG	MTYPNPISSPYVLFKPMSQPLTRKEIKAQKRALVEDAWFNGEISDDQLEAEYKALGIVNKCNKLPQ