Scaffold Ga0211539_10018869

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211539_10018869

Scaffold Ga0211539_10018869

Overview

Basic Information
Taxon OID	3300020437 Open in IMG/M
Scaffold ID	Ga0211539_10018869 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2705
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_041
Coordinates	Lat. (^o)	14.5	Long. (^o)	70.0	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014155	Metagenome / Metatranscriptome	265	Y
F020709	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211539_100188691	F020709	N/A	KTTVKTAFGRSLHYVDDPIYADALQRLTGKKTLNDLDIINLNMLGLQVNGVNSLDQLELA
Ga0211539_100188692	F014155	AGGAG	MNHQRFKFYHHSTEYYRQLYNSIQQLEDSCKDINYTVLPSTINYNRKSKFIKSNSNTNKTTKKV

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