Scaffold Ga0211539_10004404

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211539_10004404

Scaffold Ga0211539_10004404

Overview

Basic Information
Taxon OID	3300020437 Open in IMG/M
Scaffold ID	Ga0211539_10004404 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000282 (ERX555906-ERR599074)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5820
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (31.25%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_041
Coordinates	Lat. (^o)	14.5	Long. (^o)	70.0	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014114	Metagenome	265	Y
F101298	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211539_100044043	F101298	GGAGG	MDRDFQKVLQALTAFDKKLSTLEDVVKNIAEATTNYASSQQNLNKEQSELNKELGEALKFLGENLSQIVNYLKLKEGN
Ga0211539_100044047	F014114	N/A	MKKYKATDPEMVQAQKDLAKLSNLSDRVISNDKDLFEELSTIQRKLCEISELKAHFLQRYEDILDEQHRLETQLCVFQHEMLHSFELVFRYYKTKKKGFK

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