Scaffold Ga0211708_10239153

Overview

Basic Information

• Taxon OID: 3300020436
• Scaffold ID: Ga0211708_10239153
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 733
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7788
  • Long. (^o): -17.9098
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006867	Metagenome / Metatranscriptome	363	Y
F059941	Metagenome	133	Y
F063682	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211708_102391531	F006867	N/A	MLQGKELHKSIQKRCRIQPGMLVKSSHADVIDKLALVVKVSPACSFDRDYEGAEEHIFYLCEPFDGTPSFVDYVCNLEQVS
Ga0211708_102391532	F059941	AGCAGG	VKLGTLVQFTALGKVLDTGYVMKYDDDPEMIWVNYFKMGPQRVYKDSTMQEVISEAG
Ga0211708_102391533	F063682	AGGAGG	VKPGDLVRIRKTSIDHMSANWFIWHAEHKTPLVLIKELNKNYWNVLKPDGETVFIHKTHLTKRMY