Scaffold Ga0211708_10014081

Overview

Basic Information

• Taxon OID: 3300020436
• Scaffold ID: Ga0211708_10014081
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3008
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7788
  • Long. (^o): -17.9098
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014155	Metagenome / Metatranscriptome	265	Y
F020709	Metagenome / Metatranscriptome	222	Y
F030784	Metagenome / Metatranscriptome	184	Y
F033075	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211708_100140811	F020709	AGGAG	MTNIETQPKTAFGKTLHYVTDPVYADALQRLTGKKTINDLDIINLNMLGLQVNGVNSLDQLELAV
Ga0211708_100140812	F014155	N/A	MNHSINYYRQLYNSIKQLEDNCKEVNYQVLPSTINYKRKSKFIKSNSNTNKLHKKVM
Ga0211708_100140815	F033075	GGAG	MTQKSPMQLAYECVLHTYNPLHIKDILIHGASRKAIHHKTTDDILTYYANHNEGIHHNLLDAKPKYCQDYLFMQWCYNQTDKTQEDQFEFLRDVVWLYIDAVADELGDEYELHDKTRKEVEDEVLAIDFKLRKNELQVIDGGKN
Ga0211708_100140819	F030784	AGGAGG	MFNTYIEDKAMIPVLLGYDWMISHDTWTDCPYETYMSLKKKVIHNGNAKELS