Scaffold Ga0211708_10008132

Overview

Basic Information

• Taxon OID: 3300020436
• Scaffold ID: Ga0211708_10008132
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3914
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7788
  • Long. (^o): -17.9098
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028039	Metagenome / Metatranscriptome	193	Y
F041493	Metagenome / Metatranscriptome	160	Y
F042628	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211708_100081323	F042628	N/A	MGKYNKSNKNNIFRDKPEITISEHTVVKNGKKMKIVVPEGKIGYGDVESHAQMAGDLATKHSDDNKAGEKAYEEVRRHRDTDSGSTIEENKLKMAYNKMASRMPVIQQFKITDNTGKHIATEYLFMKTEPSGLTRPLKIRVDLDTGKTEEIPV
Ga0211708_100081326	F028039	AGGAG	MTTLLGRWETIVKQLRFENNWAEVLENYLKEQKLDELPEPEWSDDDPTMAYVYLPARSLNGELVRYDKTRARMFPESIVGYLEKGGLMKLPAKVAASKTKEQLPKMETEKPKLDKKIEKLGDLQDE
Ga0211708_100081327	F041493	AGGAGG	MTTNQDYYVKEIETNDAHQYTTIFDSVTGAPFRVKNEMVGHYLEKVKRENQVVDNKLVATGKWIPAFVKTTNEIIGSPSSGKADKVAPVSQVKAGKRRRGRRGRKK