Basic Information | |
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Taxon OID | 3300020433 Open in IMG/M |
Scaffold ID | Ga0211565_10001505 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11078 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (44.83%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_138 | |||||||
Coordinates | Lat. (o) | 6.3315 | Long. (o) | -102.9484 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F014114 | Metagenome | 265 | Y |
F038722 | Metagenome | 165 | N |
F039181 | Metagenome | 164 | N |
F101298 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211565_1000150517 | F014114 | N/A | MKEYKATDPEMIQAQKDLAKMSNLSDRVITNDKDLFEELATIQRKLCEISELKAHFLQRYEDILEEQHQIETRLAIFQNEMLHSFELIFRYYKTKKKGFK |
Ga0211565_1000150519 | F101298 | N/A | MFTYPKFMDRDFQKVLQALTTFDKKLSNLETIVNKMAEANYNYATSQQELNKQQSDLNKDLGEGIKMLGNSMSDIIKFLQKQGGIN |
Ga0211565_1000150523 | F038722 | GAGG | MNITESRDEAFEAIAEMLRSNIKKTKIASQLAADYCVSDKTVYKWITKVEEMYDIEPIESILQQQKSELKSEIYQDLIRDYHKAKDDKDDELRRKIGAILNNTYLKKITFN |
Ga0211565_1000150525 | F039181 | GGAG | MPKGKYYEYQIKRSALDQDYLSGNIDDFQYARESLDLDLKYEPYILAQTINSEIAKKQHNIGDNK |
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