Scaffold Ga0211565_10001505

Overview

Basic Information

• Taxon OID: 3300020433
• Scaffold ID: Ga0211565_10001505
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001989 (ERX556106-ERR599030)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11078
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (44.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_138
• Coordinates
  • Lat. (^o): 6.3315
  • Long. (^o): -102.9484
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014114	Metagenome	265	Y
F038722	Metagenome	165	N
F039181	Metagenome	164	N
F101298	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211565_1000150517	F014114	N/A	MKEYKATDPEMIQAQKDLAKMSNLSDRVITNDKDLFEELATIQRKLCEISELKAHFLQRYEDILEEQHQIETRLAIFQNEMLHSFELIFRYYKTKKKGFK
Ga0211565_1000150519	F101298	N/A	MFTYPKFMDRDFQKVLQALTTFDKKLSNLETIVNKMAEANYNYATSQQELNKQQSDLNKDLGEGIKMLGNSMSDIIKFLQKQGGIN
Ga0211565_1000150523	F038722	GAGG	MNITESRDEAFEAIAEMLRSNIKKTKIASQLAADYCVSDKTVYKWITKVEEMYDIEPIESILQQQKSELKSEIYQDLIRDYHKAKDDKDDELRRKIGAILNNTYLKKITFN
Ga0211565_1000150525	F039181	GGAG	MPKGKYYEYQIKRSALDQDYLSGNIDDFQYARESLDLDLKYEPYILAQTINSEIAKKQHNIGDNK