NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211554_10108827

Scaffold Ga0211554_10108827


Overview

Basic Information
Taxon OID3300020431 Open in IMG/M
Scaffold IDGa0211554_10108827 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1404
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_145
CoordinatesLat. (o)39.2173Long. (o)-72.0327Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005012Metagenome / Metatranscriptome415Y
F007392Metagenome / Metatranscriptome352Y

Sequences

Protein IDFamilyRBSSequence
Ga0211554_101088272F007392AGGMKIFFLLSMFFYSFAYSEDFNLICEGERKVHNLSGKEFNVTDFESVLLKINNNSMEYIGVNSGRSYFFSNREYSAPKKPPHEDIKITEHYEYTPKTIKASQTIADTGDSEESSISLFSLDINLMTGKLKEKEIISYKKTNVKSVNNNFQALCKREDRSY
Ga0211554_101088273F005012AGGMKTILALLFLVPSVTFAEDLKLLCKGEEAKYLEEDPNSKEVTTKVIGIQLYEEGMRLDGEWFDNKSDLTEDYSLERSYVKSKDNITGVRSFSTNALIEGRMIHTSKIDKVEINILTNDIFWTHEFNRGDKTNNEAKTIYAFRKNF
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