Scaffold Ga0211554_10024389

Overview

Basic Information

• Taxon OID: 3300020431
• Scaffold ID: Ga0211554_10024389
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3570
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_145
• Coordinates
  • Lat. (^o): 39.2173
  • Long. (^o): -72.0327
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019396	Metagenome	230	Y
F026261	Metagenome / Metatranscriptome	198	Y
F048972	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211554_100243891	F019396	N/A	GFPCMAQQTYEPLISGDGTTFCKNYNVDSEYQKMENKPRPLYTKEIVDWFFQNELAYLELFKDKKYAPEVKDIDYKNQKIYIKWYGKSCNQIINDPEIKEWPEYMWRRQIRDIIVDQYDEGIYKLTMYPHCHYITDTKQMKAIDWYGCVPIDDPFIEQKYMQGIIHDTAQFRLDETGEPIDDKVNLEIMFKRSLGEHVLWGDENMSYIYKELFGDG
Ga0211554_100243892	F026261	AGGA	MAKLVGTTKDVIDWDPIVDLCAKCTTGDYNSVKTVVDRSEGNWRDNPELLGSYHNVIDTWDKAGYNLDEIQWWDYYPGEHFDIDIQNKFAKIIDAEPLRVFVSDVAPCNNVPYHWDVEDKEEEWLKLGELKRWVCFMDKPRWGNVLVLEEQAFHNVAQGEIWEWDSYRSYHAGTCMGVHHQYLFHFLGRPNK
Ga0211554_100243893	F048972	AGG	MKHLGVCNTIDWDSVIEQCASVEPEFVGPSHKRGDTVPGLDPILDMWEEAGIKTVHEGGTAGWDMFIPGKQFDQSIVDAWNEFYGLDCKNVWISRIHPGRFAPIHWDVHDNEENIPDCPRYHCHIGSPQWGHIFIAGNDTFYNIPQGATYEWEDRKIWHAGTNCGTVPKYIWNAW