Scaffold Ga0211554

Basic Information
Taxon OID	3300020431 Open in IMG/M
Scaffold ID	Ga0211554_10009665 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020431 Open in IMG/M

Scaffold ID

Ga0211554_10009665 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6132
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

6132

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Bathycoccus sp. RCC716 virus 3	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Bathycoccus sp. RCC716 virus 3

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_145
Coordinates	Lat. (^o)	39.2173	Long. (^o)	-72.0327	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_145

Coordinates

Lat. (^o)

39.2173

Long. (^o)

-72.0327

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F098661	Metagenome / Metatranscriptome	103	N
F099872	Metagenome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0211554_100096653	F098661	N/A	MSKGLLLGGGALMLCILLIIFIAVIYFLTRPEKESEKEKETDETPTVSGAGVDLVLNPAEETDKVEEYRIFTTEYALGEASAKNIDVKFSWMNGPTFANVETLIFVHKNKNNAKVRANVITNDNTESNASNELILEGSKITLTNSNDIVGKNTIEMYWNEVKDSNKLTEIYFDITQEHLDTPFNLTSVKNITVPVQLSSGQTASGDVISTYTNYYILPYFTDTPISNRKVQGDTNDGFNIIKNGSKQSIDGVDKFYIVEGLGKQFLSKDPDGNSLLRYDKKFKNQNEIFGSMNAVVKSAISVREAKPFKYEFIVKHLDYMATQPQHNLAAHIENVKLYDFNDTLIKTVTNNDIEFDVQPTHSVNRDDYLGAWKANKYNVGDKLFTITSDKPVHMIKVRYGRPRYAPGWTIKENGIVRFEDTRNHGTEENPTPVDYRYTLSKFNDIGDLSYSGYYDISEMEDIGLEYGLMAPNNIHDWQYDINTYEGCRQRAGEKGYNAFGFQATGTKHCWLRQVPGTGGYTVTGLQSTGEGGKKDGHVSGCALKGKKVSNNCQ
Ga0211554_100096654	F099872	N/A	MALIAGAGLCMLSVMSSSFGGLVYYLQDPEPATPTSGDDDIPQTQTKIYRKNMEIMYSTDCDATSNVSATEGTLSTSFGKSIKWTAPNIESTGTLKSGTDEKIKKLHLRNVIISTGSYKQHDENTDSEPVTVQVTDEKYCGLKLLDLCDDDKKYITDLDITYKPMEDDGKIEYKLSYASLWANKCVTDDPDSKQVQDATISGVCSTDNLDLKFNNDYESEDRSEEFKKSTLMEIENLKLVSGSYKRVKSDGTEEDVTMESKTYSGKHTINFCGDDGTEWAKDLKVDFEAIPESSTETYKIEGYRI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211554_10009665

Overview

Ecosystem & Geography

Associated Families

Sequences