Scaffold Ga0211622_10177519

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211622_10177519

Scaffold Ga0211622_10177519

Overview

Basic Information
Taxon OID	3300020430 Open in IMG/M
Scaffold ID	Ga0211622_10177519 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	915
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_123
Coordinates	Lat. (^o)	-8.8951	Long. (^o)	-140.3174	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054784	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211622_101775193	F054784	AGGCGG	MKLENLGKNQTRVIVQIPEPGKDWTWDKDIYFSYGVPVLIVNYRDATVHETAEKYSTTTSKHINAFKRMCNRFDERGGPIALEHGREWQTFLAPESRMNVVAGER

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