Scaffold Ga0211622_10005098

Overview

Basic Information

• Taxon OID: 3300020430
• Scaffold ID: Ga0211622_10005098
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8632
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_123
• Coordinates
  • Lat. (^o): -8.8951
  • Long. (^o): -140.3174
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012779	Metagenome / Metatranscriptome	277	Y
F039872	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211622_100050983	F012779	GGA	MTEELNNSDTQQGDKNWKEMREKLNLYETKIAEYEGKERQEVFKTAGLDTTKGVGKAVEMMYEGEMTVEGIQQYASEEFGVEFGNQDRLQDTVEATEQSQDKLNNIQKNSVVDLYNTDVVSQIREIESTGNTRNSIAAKLSVIEEAKKNS
Ga0211622_100050986	F039872	AGGAG	MSNIGNLVDRTFREYLEPMDDLVSYTTLSTGVNDSVTDIVFDGDMLSIEEEDALDKGTIIEINQELMICTDLNAVTNTITVKRGMKGTSAAAHTAGDLIKLSPPFPRKNVFDAVCDQIKNLFPTLFAVETQSITTGTGYTLLGSYDAPGTHNYIMSILGAISQYTDFSAGSDTTGVNFSPVTSSLIELPNPFTYTDSDGVSRTITYTTGPSVVHAIQFAGIASGHTAHVTFKKKFIEPTSESDTLSTIGLEDEYVPIIMAGVAAQMLAGRDIPSATTDYISQQLAVSNFPVGSANSVRNSLLQYQQLLMNQARKYLRAKYPEAVSVDGMVFGIQA