Scaffold Ga0211622_10005079

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211622_10005079

Scaffold Ga0211622_10005079

Overview

Basic Information
Taxon OID	3300020430 Open in IMG/M
Scaffold ID	Ga0211622_10005079 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8656
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (95.24%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_123
Coordinates	Lat. (^o)	-8.8951	Long. (^o)	-140.3174	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016204	Metagenome	249	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211622_1000507919	F016204	AGGAGG	MSRPTEQYVNVLDIKFYVCDEDGNEVLNKDGTVKEYYFNGRLKPLEYLCEDMTVADLEEIKNE

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