Scaffold Ga0211622_10001853

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211622_10001853

Scaffold Ga0211622_10001853

Overview

Basic Information
Taxon OID	3300020430 Open in IMG/M
Scaffold ID	Ga0211622_10001853 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	17819
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (88.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_123
Coordinates	Lat. (^o)	-8.8951	Long. (^o)	-140.3174	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088745	Metagenome	109	Y
F098231	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211622_100018536	F098231	GGAG	VEVGDLVRQRSVGVAIISEYIRSSLHLGLIGVIKEVHDKTNFSYDGRNRGDITVVWSNGKEETLPEIYLEKVEDEQRT
Ga0211622_100018537	F088745	AGGTGG	MSKELDTKIWLTLDKVEHQIRRAAYLATAEEYQKKIYDALDIIKEVKEEVEKKLDKPKPKGYNI

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.