NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211521_10225901

Scaffold Ga0211521_10225901


Overview

Basic Information
Taxon OID3300020428 Open in IMG/M
Scaffold IDGa0211521_10225901 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)848
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3757Long. (o)19.4167Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031252Metagenome / Metatranscriptome183Y
F046632Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0211521_102259011F031252AGGAMKSFKRYLREFAIQSTSDYVFDTPSGEAGSLKIPISGPMFKRIWPDTIRA
Ga0211521_102259013F046632N/AMSHMDRVGRRYTTIRDLEETSRYTNFGKVKRDLEKMFSALVPKYLTRGEFQDYSTIFQIWHMAKRKVDSKTMRLIIKDYIDGMEKVIKKNIDTFSDAMLSYAKKRETETSWDEQVVNNFKVKTAHFFKLKLLDGKNSLTPEQDELIEFAKSQGWKTKMWDAPIELEIYTREVAKKELGK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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