Scaffold Ga0211521_10105299

Overview

Basic Information

• Taxon OID: 3300020428
• Scaffold ID: Ga0211521_10105299
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1357
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3757
  • Long. (^o): 19.4167
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023319	Metagenome	210	N
F024676	Metagenome	205	Y
F095588	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211521_101052992	F023319	AGGAG	MSKKIKCQRKGCSNKAYPEDMENRASNLLLCDDCYTEIRYLMADYLDIHIQEIKI
Ga0211521_101052993	F095588	AGGA	MKYKVEIELDFDKRPNKKDVLHRLFDVMKENKVEYKLHKYNNNLWSQIKRSIKNDKYR
Ga0211521_101052994	F024676	N/A	MLGIDYMKNVMYNKNNMRKDMYVIAMPYPNDIQLPDILEEDSGKVMYFKNKKDAKEFLQNLYDERNINIQALIDDNIEIMRVQ