Basic Information | |
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Taxon OID | 3300020428 Open in IMG/M |
Scaffold ID | Ga0211521_10052972 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2088 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_025 | |||||||
Coordinates | Lat. (o) | 39.3757 | Long. (o) | 19.4167 | Alt. (m) | Depth (m) | 50 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F041432 | Metagenome / Metatranscriptome | 160 | N |
F045695 | Metagenome / Metatranscriptome | 152 | Y |
F061900 | Metagenome / Metatranscriptome | 131 | N |
F084706 | Metagenome / Metatranscriptome | 112 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211521_100529722 | F045695 | N/A | MKDKRQLFLNIWNKKNSPVRDRIKAKLENRGIEPTELNCYEYWMGYIRPWADVRGNIHHINPFRNEAFMRSIGRNKYGTPFKMANRNKKKKRKFRK |
Ga0211521_100529724 | F061900 | GGAGG | MTDSSSEEDVHMAAELMEAKMALGQARTQMTHMLRMGNFHIEIVPNQDINVEEFFTKTMDNIWDRFGKDALEVKVSGMENMKPPNGGGGMHQ |
Ga0211521_100529725 | F084706 | GGAGG | MKAPEVGTTLGKCIFDNGVIVEGQSIRSQYATLRSGRWICGECLLDMLPTALEATESHMIAEAEKKDKLIAQVKKYGWSVNPTTGKLEKL |
Ga0211521_100529726 | F041432 | AGGAG | MSENEKTELKFLGGLFRNESKKGDVYYSGKSEDGTQWVLFRNAYWKEGETNKPYFRLHTRVPVGSSSPAQD |
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