Scaffold Ga0211521_10052972

Overview

Basic Information

• Taxon OID: 3300020428
• Scaffold ID: Ga0211521_10052972
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2088
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3757
  • Long. (^o): 19.4167
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041432	Metagenome / Metatranscriptome	160	N
F045695	Metagenome / Metatranscriptome	152	Y
F061900	Metagenome / Metatranscriptome	131	N
F084706	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211521_100529722	F045695	N/A	MKDKRQLFLNIWNKKNSPVRDRIKAKLENRGIEPTELNCYEYWMGYIRPWADVRGNIHHINPFRNEAFMRSIGRNKYGTPFKMANRNKKKKRKFRK
Ga0211521_100529724	F061900	GGAGG	MTDSSSEEDVHMAAELMEAKMALGQARTQMTHMLRMGNFHIEIVPNQDINVEEFFTKTMDNIWDRFGKDALEVKVSGMENMKPPNGGGGMHQ
Ga0211521_100529725	F084706	GGAGG	MKAPEVGTTLGKCIFDNGVIVEGQSIRSQYATLRSGRWICGECLLDMLPTALEATESHMIAEAEKKDKLIAQVKKYGWSVNPTTGKLEKL
Ga0211521_100529726	F041432	AGGAG	MSENEKTELKFLGGLFRNESKKGDVYYSGKSEDGTQWVLFRNAYWKEGETNKPYFRLHTRVPVGSSSPAQD