Scaffold Ga0211521_10000591

Overview

Basic Information

• Taxon OID: 3300020428
• Scaffold ID: Ga0211521_10000591
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31471
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (54.05%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3757
  • Long. (^o): 19.4167
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033766	Metagenome	176	Y
F036656	Metagenome / Metatranscriptome	169	Y
F040580	Metagenome / Metatranscriptome	161	Y
F055658	Metagenome / Metatranscriptome	138	Y
F085551	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211521_1000059111	F036656	N/A	MKLSSNQSIPLEYLKGACIFLSDEDEGRYIKDVCVDLEKHSIILIDDNGNGMYFESLRNASIQLRGGR
Ga0211521_1000059113	F033766	AGGAGG	MSDYPYNLTAIATHLRELAQSIAKKLDISEDDAWDLCMEKLESKFVSMKREDDQ
Ga0211521_1000059114	F085551	GGAGG	MSYSIRTRLHHWIEQCPCTNFLVKNKKEQEQVDDVWYDVVVVECLVKAEEQQ
Ga0211521_1000059125	F055658	GAGG	MPSKKPDTKPETDTSKAVVSRLGVNDEPVPTKPKVVKTKNGNTITYN
Ga0211521_100005915	F040580	AGG	MTHKEFFNVLIGKPPAEIELEIEIRKREVEALPDFVMKQYCLDLVKENKLQDFLIMAAMQRITETETKLLRVEMALHHHTKNLRQKKKKVKKTTIFTRIKAMLGLVS