Scaffold Ga0211603_10087285

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211603_10087285

Scaffold Ga0211603_10087285

Overview

Basic Information
Taxon OID	3300020427 Open in IMG/M
Scaffold ID	Ga0211603_10087285 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1144
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_065
Coordinates	Lat. (^o)	-35.2792	Long. (^o)	26.382	Alt. (m)		Depth (m)	850
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002150	Metagenome	589	Y
F025299	Metagenome / Metatranscriptome	202	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211603_100872851	F025299	N/A	GFGYGFTKLFLNHAKDKSKIKRSERKAKEANSVEDELDKYLNNIPAITQHLEIELMNLKEKGATPEQCKSLESKLDLAKKAQQYEMPIRMLGKPILKKVLNMVDKFGV
Ga0211603_100872852	F002150	GGAG	MVSVAVPGMIASRATKKSGQVLQEQFGYNFIDLVTKLALFYVISFLIAKYMEAVIYFQGGLSTIAGFFGIKLVQADQLPNQWVSLFVDTDQQTYSTTPTAPGQFNPPGWSKPYDYGSLDHQEAEPHLFPQKEQQFKFWDLINAIAIFYISWEAYKYWKRGGEDFLTLGIFGLLIAVLSVLSFSRFLNRFSLNRFQEANK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.