NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211536_10204084

Scaffold Ga0211536_10204084


Overview

Basic Information
Taxon OID3300020426 Open in IMG/M
Scaffold IDGa0211536_10204084 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000378 (ERX555992-ERR599112)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)770
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_056
CoordinatesLat. (o)-15.3216Long. (o)43.2843Alt. (m)Depth (m)1000
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013815Metagenome / Metatranscriptome268Y
F072442Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0211536_102040842F013815GGAGMYFVQYEKTLPPWYIGTDKVQAETSEDAVKEFYKHHDSFEDRIRSVREVQDTYQK
Ga0211536_102040843F072442AGGAMKTFKEFFQLGVTKPSKFDVQNYLNQLGTRLMQLPDIIRTIEKHFKNIKKLKLDRSGRKVLSFEEHIPEEITKRDIKKNK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.