Scaffold Ga0211536_10102094

Overview

Basic Information

• Taxon OID: 3300020426
• Scaffold ID: Ga0211536_10102094
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000378 (ERX555992-ERR599112)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1118
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_056
• Coordinates
  • Lat. (^o): -15.3216
  • Long. (^o): 43.2843
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017147	Metagenome / Metatranscriptome	242	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211536_101020942	F017147	N/A	VVLNLRLEMPKWKKFYKFKEGLAVTNLLYEPLVSKDKKIFCMNWNKNEYHPNEFMTEELYNFWFNQEVKYLLHLSNKKYIPEILYLDTKNRMIEFKWYDKNLNVMIENNTINKIKNWQNKIKEIKDDLEKDKIFKINMYPHTFYFDDEDNAHIMDLYGCSDRYSRYLDTKFLKPLIRGKRFNKFIANERLDTHELYKETIKTNYAEWPGDFLNA