Scaffold Ga0211620_10002147

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211620_10002147

Scaffold Ga0211620_10002147

Overview

Basic Information
Taxon OID	3300020424 Open in IMG/M
Scaffold ID	Ga0211620_10002147 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000242 (ERX556056-ERR599138)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9290
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_048
Coordinates	Lat. (^o)	-9.4112	Long. (^o)	66.3281	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038722	Metagenome	165	N
F039181	Metagenome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211620_100021474	F039181	GGAGG	MPKGKYYEYQIKRSALDQDYLSGNIDDFQYARESLDLDLEYEPYILAQTINSEIAKKQHNIGDN
Ga0211620_100021478	F038722	AGGAG	MDRGGLIMNITESRDEAFEAIAEMLRSNIKKTKIASKLAADYCVSDKTVYKWITKVEEMYDIEPIESILQQQKSELKSEIYQDLIRDYHKAKTDKDDELRRKIGAILNNTYLKKITFN

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