Scaffold Ga0211525_10319600

Overview

Basic Information

• Taxon OID: 3300020423
• Scaffold ID: Ga0211525_10319600
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000315 (ERX556027-ERR599062)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 639
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED264 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_037
• Coordinates
  • Lat. (^o): 20.8188
  • Long. (^o): 63.6158
  • Depth (m): 600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F061282	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211525_103196001	F001334	GGTGG	MMKFKEYLQINADDSIEQVMNGEWISKSRSTWKASDDEDNTIEIHNDGHDPELNGESWTVHTNTFAPKAFAYFTKQFIKEVRPAELSYARARIYPSSSN
Ga0211525_103196002	F061282	N/A	LIEASPTTAMGGGNLATRGIPLLKKPPKGLVMKRFGGIDVFAIDPTYFQKSRLGKKKYTRYSGYVGEDEVGEYIRAFARKYPKKPIIVMDSQSGCMQYLRHGG