Scaffold Ga0211525_10243704

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211525_10243704

Scaffold Ga0211525_10243704

Overview

Basic Information
Taxon OID	3300020423 Open in IMG/M
Scaffold ID	Ga0211525_10243704 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000315 (ERX556027-ERR599062)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	750
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_037
Coordinates	Lat. (^o)	20.8188	Long. (^o)	63.6158	Alt. (m)		Depth (m)	600
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049700	Metagenome / Metatranscriptome	146	Y
F077398	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211525_102437042	F077398	AGGAGG	MTVKKKSKSKEITKATVKVKEGKVDVYTKAYNDTIKRAGNVYSADYSLIDETIVDIKKMSRKVSTSDYAANNVYLILQDALKKITLAEK
Ga0211525_102437043	F049700	GAG	VATKLNVDPGSDIGKKLWERHQADEYTHVNNYKEAICINCFTKDATSATIADICGECAGKRGREPLLATITQKLYGLCFFCGHYKFEIEQINARFCRGCH

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