Scaffold Ga0211525_10108882

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211525_10108882

Scaffold Ga0211525_10108882

Overview

Basic Information
Taxon OID	3300020423 Open in IMG/M
Scaffold ID	Ga0211525_10108882 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000315 (ERX556027-ERR599062)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1227
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → environmental samples → uncultured Gammaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_037
Coordinates	Lat. (^o)	20.8188	Long. (^o)	63.6158	Alt. (m)		Depth (m)	600
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007696	Metagenome / Metatranscriptome	346	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211525_101088821	F007696	N/A	TAMSEEWTTYRHEVRQHGNALEAGVEAFASLDAIKNFQNHPVTEVRYTSTYDDEGVETIGPGTEEHNREVDKTNWGWPVAPDAEADPYHVRYE

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