NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211525_10009621

Scaffold Ga0211525_10009621


Overview

Basic Information
Taxon OID3300020423 Open in IMG/M
Scaffold IDGa0211525_10009621 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000315 (ERX556027-ERR599062)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5959
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_037
CoordinatesLat. (o)20.8188Long. (o)63.6158Alt. (m)Depth (m)600
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041140Metagenome / Metatranscriptome160Y
F074007Metagenome120N
F093386Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0211525_100096211F074007N/AMNIEERVYGKYGNNLIFKKELLDIVDKLGGQLLFFMHIDRWDLPLKNRWLDYFEYEFKPDKKFYIIFEEEEFSTHTVLDLDKVVDFFKEKGVDKDKLIWVTASHNFNDVLKRFNKYIEIKSIPLHWGDSRYMKQETSNKNPKLIVFDKDKVINYDVKSFGFNSIFYNLKTILDNEFLYEIKTKKTPSKLFCCPMGLKKISRLNLLQKLYDRRFIKDLDKVDDDDLGWVSLNSEKRIFKDDIYLYDKT
Ga0211525_100096212F093386GGAMKNINIYIHTWKINNWREILNEQLSQIDDSGLGDIASIHICNSDAEKKTWFEMWKHSFDNDSYYLYLQNLGISWQGTKYEDITTNWRKWVMGGVVENWKEYISHLDEYDAVGDCWKDVSYYRDWHRNKRKYKDSDLTYPQHFATQMWWTKSSHLSKLENPFEHQKYSVPEHGGERVIMEGWLTSYGENFKELRNDLSKEPAEAYINQHLKNIPR
Ga0211525_100096216F041140AGGAGMKWINTKVEFTWDSKKQKYVETDVQGYHYSGPIALCGGGWESFGSGDLVSISGSFQGIPHVSMSAGDVVLSANITGLPDSDVASEYLLWNYTGSAGISSQVTLATSSVESITTHSRAPSDGGMFSLVCENGRTDDILLTEAHPLLVWSGSADENVTGSGTWFFEYVEDIGTDYKLLSSSLEPIEITSITEFSGSESSSFFRFDVEPYDVYFVEGILVHN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.