Scaffold Ga0211653_10021805

Overview

Basic Information

• Taxon OID: 3300020421
• Scaffold ID: Ga0211653_10021805
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3023
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.2476
  • Long. (^o): -85.3343
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012114	Metagenome	283	Y
F018906	Metagenome	232	Y
F019646	Metagenome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211653_100218052	F019646	N/A	MSNNFEITYTSDCCGAYVHSDADLCPTCLEHCEVIEDRVDYDCSESVHFESSLDFYGAG
Ga0211653_100218053	F012114	GGAG	MSNNNCVVYPRKNVWAVLDMSGKKLGEVGAMTENEARQKVAEHVMIPFRLSHIEE
Ga0211653_100218055	F018906	AGGAG	MKTCKVNPLKLNETRFEAEAHKKEGRYVKRYYFSNGLGASVACHSGTYGGHAGYFEVAIIKYPLGTNGEITGELIFDTQINKDLGCVDVIGWRDFFEVADILQQIRNYNTGEYAYNE