Scaffold Ga0211512

Basic Information
Taxon OID	3300020419 Open in IMG/M
Scaffold ID	Ga0211512_10000713 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020419 Open in IMG/M

Scaffold ID

Ga0211512_10000713 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20614
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (74.07%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

20614

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (74.07%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_004
Coordinates	Lat. (^o)	35.5571	Long. (^o)	-6.5586	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_004

Coordinates

Lat. (^o)

35.5571

Long. (^o)

-6.5586

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019327	Metagenome / Metatranscriptome	230	Y
F032309	Metagenome / Metatranscriptome	180	N
F033761	Metagenome / Metatranscriptome	176	Y
F046625	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211512_100007133	F032309	GGA	MRTETKEFFEYTKSLPFKDITHFWDIPYKEMLDEIKTVDESYWRRPFDADNDQIDRMKLDDSKSVNHYPGMKGDLIEAHGWKSLCFLNETGDSKDQITRFPPVFNTAGDYKETLKYFLNNRKWTNVSDFSPTLVKFFKEVISKYMHVGQIFVTRLESGGVITEHNDIPEDSKHLLDGEQVHMFDMLNTFNLCLNHVKSCYSVFDNKVMPAYDGCLRWTNVGKKHWVVNMNRKPQYQIIWQGIYKKQFRQLVMENK
Ga0211512_100007134	F033761	GGAG	MAQINNHEFYGLDTAYVEKHKELFDFFEGQNLDIEINDDFEQLKTILTSKDKDDYAYDFDPAFETFLDNSTGFILYLRYNNEVVATYAAKKLSLPVFIEGMKLKYPGNYDTIDNFPGQSAYSSCQWVSKDHRGKKWGRVLDHLKKNLCFDLMKCETNFAIHKSDLRDYHVNHLAYSNSKRLAVIPNGDVGGAGEVIDKEYWIAYSSITEWADKQSEVKTLYT
Ga0211512_100007135	F046625	N/A	VKLKHYTLKNFLSSQEIDSFNYNIKQEFKSDTGDLTLYHQKISTSIIEKIKKCIGEFTIRHSHIYNLKQPYRLHCDSGQENNSYYTIIVPLDKNPQGGLFIMNQWSDKAYSLDDYYTQNIQSVLNFEERKEKINEFNPNISLPDTIDFKHIKDKRGFSVKDYIDYEYNKAIMYPGKYYHCSQNIKNFTGKKSLAIFTNETLHT
Ga0211512_100007136	F019327	N/A	MKHYTLKPYDLESKHLSQLHNIIEKVVSEKKDEYWDNYTDYSVFDQTMITIGMVDDKVKCFSSIYTREFYGNYVYRLFNRFLVDDDIREEGGSKSYKGEHRFFDMIYQQIEFVKTLQPKFYFMSRQRKNTRWLKWYFNKFNKQYDTNLVVSDEQYRVCNGSNYDCCQTLIYPKEMKIPFEKLL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211512_10000713

Overview

Ecosystem & Geography

Associated Families

Sequences