Scaffold Ga0211557_10017995

Overview

Basic Information

• Taxon OID: 3300020418
• Scaffold ID: Ga0211557_10017995
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100002051 (ERX556028-ERR599136)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4026
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_142
• Coordinates
  • Lat. (^o): 25.5416
  • Long. (^o): -88.4044
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001504	Metagenome / Metatranscriptome	681	Y
F005533	Metagenome / Metatranscriptome	397	Y
F021120	Metagenome / Metatranscriptome	220	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211557_1001799512	F001504	GGA	MTYDSEYYYAVQTFLEDDELCKIWNIIEIAMNRAGYDISNSELSMRLYDNELEDNIEYDMENSL
Ga0211557_100179955	F021120	AGGGGG	MKVFTIQFTEDELTELENVLDQHVYAEVIETKGGEGIIGKVHNRILDVHYQNSDGRVPVQEVAHRHFRKDLDLL
Ga0211557_100179958	F005533	AGG	MSYTHNETQLLTLISNINNQFYYIGEEDDKVAPIDVKKFTEYCVAFIDSLEIEK