Scaffold Ga0211528_10110257

Overview

Basic Information

• Taxon OID: 3300020417
• Scaffold ID: Ga0211528_10110257
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1109
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_038
• Coordinates
  • Lat. (^o): 19.0108
  • Long. (^o): 64.532
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004849	Metagenome	421	Y
F008153	Metagenome	338	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211528_101102572	F004849	GAGG	MTKQQFKTRVGQNKIFSCKWINNKGEVSVLKRGILGINAWRHTNMATRGSVNEHDKYVLAYRIGNGLSDDNRRWVNINPETVFEVNGNSIREWEIHA
Ga0211528_101102573	F008153	GAGG	MVILLESGKFMPNELITANNVNIQPVIETLVELVKDKKATGELDNLINAQLPEKSSADWKLICGVLCNSVVEWVAQNKGNDVDPMDLLRHLQSDVGYIMQRLGLG