NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211528_10022070

Scaffold Ga0211528_10022070


Overview

Basic Information
Taxon OID3300020417 Open in IMG/M
Scaffold IDGa0211528_10022070 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3151
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)19.0108Long. (o)64.532Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039872Metagenome163Y
F102838Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0211528_100220702F039872GAGMSTNIGELVDRVYREYLEPMDDLTSYTVLNEGSELSASDTVITFNGDLLTQEEEDAMDAGTIIECEKELMRCVALDTVNNQVTVVRGVRGTTATTHADGSVLKIAPPFPRQVVFDAVKDQINNLFPTLFAVDTQSITTSTGYTLIGSYDAPGTHNYLVSILSAISQYTDFSAGSDTTGVVFAPVTSSLVELPNPFTYTDSDGVSRTITYSSGPSVVHAIQFSGIASGHTAHVTFKKKFIEPTAESDTLATVGLEQEYEPIIMAGVAAQLLSGRDIPTATADYISDQLSVSAFPVGSASSIRNSLLQYQQLLINQARKHLRAKYPEAVSVDGKVFGIQA
Ga0211528_100220704F102838N/AVKETDGTDVSYTVSAGDVLRVDPSGWAFASNGYIRVSSNGTEAADRKIVLHFRHS
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Institute for Fundamental Biomedical Research
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