Scaffold Ga0211644_10086970

Overview

Basic Information

• Taxon OID: 3300020416
• Scaffold ID: Ga0211644_10086970
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1266
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_110
• Coordinates
  • Lat. (^o): -1.972
  • Long. (^o): -84.601
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F029123	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211644_100869701	F029123	AGGAG	MSYEVWFGQDGNWFGFHSFKHRMDAVRYELRYLKMFPKLTVEIRRREHGSCS
Ga0211644_100869702	F006217	GGAG	MIELLLAMVEEQNPIHKYCMSKHEHWTGRAACVQELKHAQRKMEVEELRQFLKENPHYRYPGMALPNGRIKPLDVCWGSSKTYGTKGVC
Ga0211644_100869703	F005813	AGGAGG	MKLYRNSEGVWAGTQADARKMCGKTYSTVDVPTDKPNLLKFLNLNQVGSYTSNDKQGTITGEIDTSNKSAMSWIRWSHDCMCRGQYEDAKEMLRKGLELANDRTTTSDG