Scaffold Ga0211644_10019639

Overview

Basic Information

• Taxon OID: 3300020416
• Scaffold ID: Ga0211644_10019639
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2758
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_110
• Coordinates
  • Lat. (^o): -1.972
  • Long. (^o): -84.601
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035540	Metagenome / Metatranscriptome	172	Y
F082532	Metagenome	113	N
F099136	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211644_100196392	F082532	AGGA	MMDLEREAKEYMEAKRKGKIICPKCDTEMIQGGDHDGEDDYIVSNFSCNTCDTFLLLYWK
Ga0211644_100196393	F035540	AGGA	MTWVLVALFIFNEEPMVMSDNVLYDSKERCDAAASTRREILEATRPEYMWEAEYWVWCSQVPQEV
Ga0211644_100196394	F099136	AGGAG	MDVLATAVIVFFGTFSVAEKYIEPWVNDKVEQYYEAKE