NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211644_10003437

Scaffold Ga0211644_10003437


Overview

Basic Information
Taxon OID3300020416 Open in IMG/M
Scaffold IDGa0211644_10003437 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7227
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_110
CoordinatesLat. (o)-1.972Long. (o)-84.601Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003693Metagenome / Metatranscriptome473Y
F018479Metagenome / Metatranscriptome235Y
F092017Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0211644_100034376F018479AGAAGGMSTNIGNLIDRVYREYLEPMDDLTSYTVLNEGSELSASDTVITFNGDLLTQEEEDAMDAGTIIECETELMRCVSLDTVNNQVTVVRGVRGTTASTHADGSVVKISPPFPRKNVFDAVCDQIKNLYPTLFAVETKSITAKTGYIPLEGANDNYLIAPIKAISQYTDFSSGSDETGIVYTGVAVELVDLPNPFTYTDSDGVSQTITYSNNGPNKVNAVQVYNVNSGHTVFVTFKKKFIEPTAETDTLTTVGLENEYEPIIMAGVAAQLIAGRDIPTSTADYITDQLSVQSFPVDSATRIRNSLLAYQRALIQQARKDLRARYPEPVTINNLNYG
Ga0211644_100034377F092017AGGAGMGMLLMLKEGRNLDIESIPDQPLEPSFPIVNPNDNANDGWFGLGAFGQAIFAAELVEEGA
Ga0211644_100034378F003693AGGMIKSKQCLIDVSEDNNNSLGVAAEGMLLCGVQFPAAMTGTAITFDFSMDNSTFVDVKETDGSNVSYTVSAGDVLRVDPSGWAFASNGFIRVTSNGNEAADRKLILHFRHS
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