Scaffold Ga0211553_10074640

Overview

Basic Information

• Taxon OID: 3300020415
• Scaffold ID: Ga0211553_10074640
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001146 (ERX555973-ERR599166)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1426
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_145
• Coordinates
  • Lat. (^o): 39.0869
  • Long. (^o): -70.0111
  • Depth (m): 590

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033842	Metagenome / Metatranscriptome	176	N
F040140	Metagenome	162	N
F068933	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211553_100746402	F040140	GGAG	MLSCKLSMPKFGKKFEDTGYDGSHHWKVLHDEVNKIECDYCKEKGVKLMRGLHDSVNLHLGKKAQHPKDLDFALKHIVWSKKQLEPGLKCELC
Ga0211553_100746403	F068933	GAG	MSKLDLLKQLHRELLMPKALPGMKGTIGRPSDTIPVHAAGQLKGYWKNVKHKPATGFEVSKKNKFKD
Ga0211553_100746404	F033842	AGGAG	MNILKDLTSPTKLIDKAKLGMKGAAGYAAATVALEAGTQLLERFVLDPHLPAAANVMNTVITNNAPGLGTVDVRDAIVLLPAETQAYAMLSKSNKQTHFINALSSYVTKIVLRRTGLNPKEIADKTEKLITPRIMLPSVM