Scaffold Ga0211553_10058356

Overview

Basic Information

• Taxon OID: 3300020415
• Scaffold ID: Ga0211553_10058356
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001146 (ERX555973-ERR599166)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1643
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_145
• Coordinates
  • Lat. (^o): 39.0869
  • Long. (^o): -70.0111
  • Depth (m): 590

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013596	Metagenome / Metatranscriptome	270	Y
F094574	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211553_100583562	F013596	N/A	MEVFAESLTILSIVVSMSVCAVLIARIYRKNSALDPKITNKLRKQQEEYISEVERKNRSLQNKLNSMQKGPVLSETGDLDSVLPELVGQLDGILPKWATKFLKSNPDIVNTVVEYAKSNPEKAKQLIGKFVKVGPKAQTSNDATLLGL
Ga0211553_100583563	F094574	N/A	MYERFKQIQLERGKNASLRLNELIERDVKEADPQFKELNAVRSKDAPDIITPNPFLKSQTHSLPEWEEYLRTKTEREGNELINHLIALK