Scaffold Ga0211553_10052334

Overview

Basic Information

• Taxon OID: 3300020415
• Scaffold ID: Ga0211553_10052334
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001146 (ERX555973-ERR599166)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1750
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_145
• Coordinates
  • Lat. (^o): 39.0869
  • Long. (^o): -70.0111
  • Depth (m): 590

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009716	Metagenome / Metatranscriptome	314	Y
F015932	Metagenome / Metatranscriptome	251	N
F018617	Metagenome	234	Y
F018621	Metagenome	234	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211553_100523341	F018617	N/A	KKNIENDLIGIFEKYPKSLEKVISICFNLILDCFVVVYGEKKTIKLLDEAKKSVRGGNHTQNPVKTRKTTKRSKK
Ga0211553_100523343	F015932	N/A	MMKKDEKNMKLNTPDILWKLDNLADQVCLDNDNIVRWCIDQNDCDDVPDRTARGILQKHGLKVSDLKTLDNDGVLVHRLGDDIPGGMVDDRCLHISTHLVPVLRVLPNILDRVW
Ga0211553_100523344	F018621	AGG	MKATEKIKLIIDLEFGFQQLDFEELHMIKDTLNKEIENKAKLLFRGKKLHKAVTERELKKPSRW
Ga0211553_100523345	F009716	AGGAG	MSKKLNNEDVPTSMKMPINNSLSEDSKHLKKEVDAWLKEGNKKTIIPTKENK