Basic Information | |
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Taxon OID | 3300020415 Open in IMG/M |
Scaffold ID | Ga0211553_10052334 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001146 (ERX555973-ERR599166) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1750 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_145 | |||||||
Coordinates | Lat. (o) | 39.0869 | Long. (o) | -70.0111 | Alt. (m) | Depth (m) | 590 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009716 | Metagenome / Metatranscriptome | 314 | Y |
F015932 | Metagenome / Metatranscriptome | 251 | N |
F018617 | Metagenome | 234 | Y |
F018621 | Metagenome | 234 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211553_100523341 | F018617 | N/A | KKNIENDLIGIFEKYPKSLEKVISICFNLILDCFVVVYGEKKTIKLLDEAKKSVRGGNHTQNPVKTRKTTKRSKK |
Ga0211553_100523343 | F015932 | N/A | MMKKDEKNMKLNTPDILWKLDNLADQVCLDNDNIVRWCIDQNDCDDVPDRTARGILQKHGLKVSDLKTLDNDGVLVHRLGDDIPGGMVDDRCLHISTHLVPVLRVLPNILDRVW |
Ga0211553_100523344 | F018621 | AGG | MKATEKIKLIIDLEFGFQQLDFEELHMIKDTLNKEIENKAKLLFRGKKLHKAVTERELKKPSRW |
Ga0211553_100523345 | F009716 | AGGAG | MSKKLNNEDVPTSMKMPINNSLSEDSKHLKKEVDAWLKEGNKKTIIPTKENK |
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