Scaffold Ga0211553_10002026

Overview

Basic Information

• Taxon OID: 3300020415
• Scaffold ID: Ga0211553_10002026
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001146 (ERX555973-ERR599166)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11788
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (66.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_145
• Coordinates
  • Lat. (^o): 39.0869
  • Long. (^o): -70.0111
  • Depth (m): 590

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012639	Metagenome / Metatranscriptome	279	Y
F015413	Metagenome / Metatranscriptome	255	Y
F017933	Metagenome / Metatranscriptome	238	Y
F024225	Metagenome	207	Y
F029595	Metagenome	188	Y
F037479	Metagenome / Metatranscriptome	168	Y
F071255	Metagenome / Metatranscriptome	122	Y
F104046	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211553_1000202614	F017933	GAGG	MQEAILGISLVGFSTMIGISLFNSRKNDTLIRNLCERIAKLEGMLEARLK
Ga0211553_1000202615	F037479	GGAG	MEFNGFYNFAGGGTETILGVANENLPSFTENICANQNMLFTGQFSNLSRQLIHITFQGFGSAQSFHRHDLRAYESIQLYNIPIASVSIYVPSGETIGIHGMGTIWTSQDEDEYAIMGAKSGLFEALPNSPNFNTDSYTRVTQAAAATVDLVVSGALDDFAVYKITVSPVAAQIVDLFWTNAANGNIQFIGNLNFAGAGTFVYDFPDSMMRNPNRQGGKLRMTTSTAASTVVDVVGHIVVEGQ
Ga0211553_1000202617	F104046	GGA	MLNKTVQWETHTLSGGVPVFGLNTKQKFAPQPLDNVLDQGQFDIINANVFRGKRTHGELNFQQYQGHNVNFSQPYHAPQNNNSWENNIVWARNPYRNYQLRITGQ
Ga0211553_1000202620	F012639	GGAG	MSSNNSGLVLNCTAQYAGLAPIATVSACLMQTSPVVNGVNELQVPLTENWIATDVYILATGVGAGNPTAVDPVISMDKNRGRQLVQTPPLSAMLITSNTRPRFSPQPVGFEGGSIIRMFATSTVVNAAAVSNVQFSVAISIV
Ga0211553_1000202621	F015413	AGG	MESTDLEKQVNDLLTTKFEQPEFEQLLPKGILGKDMLIGSAGTALSVQMGNIVGKFLPLGQLPTGTASILAGILLQKVGGSNGNLKKLSEGIIQGGIATAMTPFVSGLIPAQFSQEVKTEEVQKELNPLVNGVMW
Ga0211553_1000202622	F029595	AGG	MKCFESPSGMKDTMLWHKRQSVRDFVRQKPMFSQLMQASKQCMRDNPHLKNDVKGAIQCETIHPQTLSSFSNFTFHTHPHNIPYPSQTDKNTTKELKKKYLLIGVVPQNKTYVFIDDDNFSKSIATI
Ga0211553_1000202626	F071255	N/A	MEDSDFTKLSTGLKEGLSEEFSTLKVSINDLSDKMSLTEKETDGMTKVSDFVEHLQTCDNNNCEIHKAQNTLNNNNYMKGFLLGAKFGKQKRN
Ga0211553_1000202627	F024225	N/A	LKDFKWNFYDKEIKNLSKEMPHGVTGDNVIQCYVNDENNRMYYLQNMMIICHELSHMILKIYYPKIRGKLTYDDTWGKAGEERNFFSTEIHNRVYEGRTRKLTTWHDSKEFFFYGVDIEDLTNKRNINNGF