NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211523_10192752

Scaffold Ga0211523_10192752


Overview

Basic Information
Taxon OID3300020414 Open in IMG/M
Scaffold IDGa0211523_10192752 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000035 (ERX556019-ERR599028)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)847
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_036
CoordinatesLat. (o)20.8199Long. (o)63.5138Alt. (m)Depth (m)17
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002445Metagenome558Y
F010922Metagenome / Metatranscriptome297Y

Sequences

Protein IDFamilyRBSSequence
Ga0211523_101927521F002445AGCAGMSTGKPRICPECKGNGYLRTEMNTIVQCLTCWSEGEIDESIWARNYDPIIPDELQSTQKE
Ga0211523_101927522F010922GAGGMAKYRAPLANSDVIHLIEQNKEPEQKLWIAVLAKAFDDAFYSTDDKAALEALSWIRHGSDFNYVCGLAGRDPNYVRKRMLDKVIAREASILMQHKQIKEGADNIIKLKLKKRGPVPGTQKKVYDYKWLPKQTHDYVDR

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