Scaffold Ga0211523_10049686

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211523_10049686

Scaffold Ga0211523_10049686

Overview

Basic Information
Taxon OID	3300020414 Open in IMG/M
Scaffold ID	Ga0211523_10049686 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000035 (ERX556019-ERR599028)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1804
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_036
Coordinates	Lat. (^o)	20.8199	Long. (^o)	63.5138	Alt. (m)		Depth (m)	17
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F082546	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211523_100496863	F082546	AGGAG	MKIEKKAIIRRRIRNIKADIKSVRNSGDTYRMRILYAQLTAATIKLHNMTH

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