Scaffold Ga0211523_10019514

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211523_10019514

Scaffold Ga0211523_10019514

Overview

Basic Information
Taxon OID	3300020414 Open in IMG/M
Scaffold ID	Ga0211523_10019514 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000035 (ERX556019-ERR599028)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3025
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_036
Coordinates	Lat. (^o)	20.8199	Long. (^o)	63.5138	Alt. (m)		Depth (m)	17
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006294	Metagenome / Metatranscriptome	377	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211523_100195144	F006294	N/A	MMTDSDKPKDNIILFPKVPRRPMSNKAQELDAKRQEMIRLEHNKIFVQAVSEDLTESMLMRLKDEGVNLVDPVFLKDYKLLSEALKSLILRHVHMKHPLQERVDRSITTKGEGNNLYAITIDYKKF

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